klmr.me

About me

Hi. My name is Konrad.

I’m a senior research engineer and software developer at PetaGene.

In my previous life I was a postdoctoral researcher in Eric Miska’s group at the Gurdon Institute/University of Cambridge. Before that, I worked with John Marioni at the European Bioinformatics Institute (EMBL-EBI).

Here are some of the things I do:

Research

I did most of my research on genomics and the regulation of translation in mammals through changes in tRNA abundance and codon usage. The title of my PhD thesis was “Investigating the link between tRNA and mRNA abundance in mammals”.

Before that, I’ve worked in algorithms and software development, in particular implementing high-throughput sequencing read mapping tools, and creating frameworks for the automatic parallelisation of high-performance code on multicore architecture. I have also done work in cell regulatory networks.

Hacking

For more, see my GitHub profile. I’m also occasionally active on Stack Overflow.

Selected publications

For more, see my Google Scholar profile. * indicates joint first authors

Teaching

I have, at various times, taught on the following subjects:

  • High-throughput sequence analysis
  • CS 101 & CS 102
  • Algorithms in bioinformatics
  • Database systems & SQL
  • C++ · VB · Unix/Bash · LaTeX · R · Git
  • Compression

CV

I maintain a more or less up-to-date CV as a Developer Story on Stack Overflow.